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PulseDIA: in-depth data independent acquisition mass spectrometry using  enhanced gas phase fractionation | bioRxiv
PulseDIA: in-depth data independent acquisition mass spectrometry using enhanced gas phase fractionation | bioRxiv

General workflows for processing DIA spectra. (A) Generation of... |  Download Scientific Diagram
General workflows for processing DIA spectra. (A) Generation of... | Download Scientific Diagram

PulseDIA: in-depth data independent acquisition mass spectrometry using  enhanced gas phase fractionation | bioRxiv
PulseDIA: in-depth data independent acquisition mass spectrometry using enhanced gas phase fractionation | bioRxiv

Assessing the Relationship Between Mass Window Width and Retention Time  Scheduling on Protein Coverage for Data-Independent Acquisition |  SpringerLink
Assessing the Relationship Between Mass Window Width and Retention Time Scheduling on Protein Coverage for Data-Independent Acquisition | SpringerLink

Simultaneous Improvement in the Precision, Accuracy, and Robustness of  Label-free Proteome Quantification by Optimizing Data Manipulation Chains |  Molecular & Cellular Proteomics
Simultaneous Improvement in the Precision, Accuracy, and Robustness of Label-free Proteome Quantification by Optimizing Data Manipulation Chains | Molecular & Cellular Proteomics

Group-DIA: analyzing multiple data-independent acquisition mass spectrometry  data files | Nature Methods
Group-DIA: analyzing multiple data-independent acquisition mass spectrometry data files | Nature Methods

SWATH analysis - Why an advantage in mass spectrometry?
SWATH analysis - Why an advantage in mass spectrometry?

Data-independent acquisition mass spectrometry (DIA-MS) for proteomic  applications in oncology - Molecular Omics (RSC Publishing)  DOI:10.1039/D0MO00072H
Data-independent acquisition mass spectrometry (DIA-MS) for proteomic applications in oncology - Molecular Omics (RSC Publishing) DOI:10.1039/D0MO00072H

Hybrid Spectral Library Combining DIA-MS Data and a Targeted Virtual  Library Substantially Deepens the Proteome Coverage - ScienceDirect
Hybrid Spectral Library Combining DIA-MS Data and a Targeted Virtual Library Substantially Deepens the Proteome Coverage - ScienceDirect

Data-Independent Acquisition: A Superior Technique in Mass Spectrometry? |  Technology Networks
Data-Independent Acquisition: A Superior Technique in Mass Spectrometry? | Technology Networks

Data‐independent acquisition‐based SWATH‐MS for quantitative proteomics: a  tutorial | Molecular Systems Biology
Data‐independent acquisition‐based SWATH‐MS for quantitative proteomics: a tutorial | Molecular Systems Biology

Quantitative Proteome Landscape of the NCI-60 Cancer Cell Lines -  ScienceDirect
Quantitative Proteome Landscape of the NCI-60 Cancer Cell Lines - ScienceDirect

Mass spectrometry and proteomics
Mass spectrometry and proteomics

CompMS | MS-DIAL
CompMS | MS-DIAL

Optimization of Experimental Parameters in Data-Independent Mass  Spectrometry Significantly Increases Depth and Reproducibility
Optimization of Experimental Parameters in Data-Independent Mass Spectrometry Significantly Increases Depth and Reproducibility

Deep learning enables de novo peptide sequencing from  data-independent-acquisition mass spectrometry | Nature Methods
Deep learning enables de novo peptide sequencing from data-independent-acquisition mass spectrometry | Nature Methods

In silico spectral libraries by deep learning facilitate data-independent  acquisition proteomics | Nature Communications
In silico spectral libraries by deep learning facilitate data-independent acquisition proteomics | Nature Communications

Quantifying Plant Dynamic Proteomes by SWATH-based Mass Spectrometry:  Trends in Plant Science
Quantifying Plant Dynamic Proteomes by SWATH-based Mass Spectrometry: Trends in Plant Science

Mass-spectrometric exploration of proteome structure and function | Nature
Mass-spectrometric exploration of proteome structure and function | Nature

Prosit: proteome-wide prediction of peptide tandem mass spectra by deep  learning | Nature Methods
Prosit: proteome-wide prediction of peptide tandem mass spectra by deep learning | Nature Methods

Data‐independent acquisition‐based SWATH‐MS for quantitative proteomics: a  tutorial | Molecular Systems Biology
Data‐independent acquisition‐based SWATH‐MS for quantitative proteomics: a tutorial | Molecular Systems Biology

Chromatogram libraries improve peptide detection and quantification by data  independent acquisition mass spectrometry | Nature Communications
Chromatogram libraries improve peptide detection and quantification by data independent acquisition mass spectrometry | Nature Communications

Data-independent acquisition mass spectrometry (DIA-MS) for proteomic  applications in oncology - Molecular Omics (RSC Publishing)  DOI:10.1039/D0MO00072H
Data-independent acquisition mass spectrometry (DIA-MS) for proteomic applications in oncology - Molecular Omics (RSC Publishing) DOI:10.1039/D0MO00072H

In silico spectral libraries by deep learning facilitate data-independent  acquisition proteomics | Nature Communications
In silico spectral libraries by deep learning facilitate data-independent acquisition proteomics | Nature Communications

The workflow of DeepNovo-DIA for de novo sequencing of DIA... | Download  Scientific Diagram
The workflow of DeepNovo-DIA for de novo sequencing of DIA... | Download Scientific Diagram

SWATH-MS – Institute of Molecular Systems Biology | ETH Zurich
SWATH-MS – Institute of Molecular Systems Biology | ETH Zurich

Rapid and site-specific deep phosphoproteome profiling by data-independent  acquisition without the need for spectral libraries | Nature Communications
Rapid and site-specific deep phosphoproteome profiling by data-independent acquisition without the need for spectral libraries | Nature Communications